-
2003)
- Mamitsuka H, Okuno Y, Yamaguchi A. “Mining biologically active patterns in metabolic pathways using microarray expression profiles” ACM SIGKDD Explor. 2003;5:113-21. Available from: https://doi.org/10.1145/980972.980986
- Hattori M, Okuno Y, Goto S, Kanehisa M. “Heuristics for chemical compound matching”Genome Inform. 2003;14:144-53. Available from: https://www.jstage.jst.go.jp/article/gi1990/14/0/14_0_144/_pdf
- Aoki K.F, Yamaguchi A, Okuno Y, Akutsu T, Ueda N, Kanehisa M, Mamitsuka H. “Efficient tree-matching methods for accurate carbohydrate database queries” Genome Inform. 2003;14:134-43. Available from: https://doi.org/10.11234/gi1990.14.134
- Hattori M, Okuno Y, Goto S, Kanehisa M. “Development of a chemical structure comparison method for integrated analysis of chemical and genomic information in the metabolic pathways” J. Am. Chem. Soc. 2003;125:11853-65. Available from: https://doi.org/10.1021/ja036030u
- Limviphuvadh V, Okuno Y, Katayama T, Goto S, Yoshizawa A, Kanehisa M. “Metabbolic pathway reconstruction for malaria parasite Plasmodium falciparum” Genome Informatics. 2003;14:38-39. Available from: https://doi.org/10.11234/gi1990.14.368
- Kawano S, Okuno Y, Hashimoto K, Yamamoto H, Takematsu H, Kozutsumi Y, Goto S, Kanehisa M. “Prediction of glycan structures from glycosyltransferase ecxpression profile” Genome Informatics. 2003;14:304-5. Available from: https://doi.org/10.11234/gi1990.14.304
- Aoki K, Yamaguchi A, Okuno Y, Akutsu T, Ueda N, Kanehisa M, Mamitsuka H , Statistical Significance of Tree Similarity Scores , Genome Informatics , 14 , 579-580 , 2003 https://doi.org/10.11234/gi1990.14.579
-
2002)
- Goto S, Okuno Y, Hattori M, Nishioka T, Kanehisa M. “LIGAND: database of chemical compounds and reactions in biological pathways” Nucleic Acids Res. 2002;30:402-4. Available from: https://doi.org/10.1093/nar/30.1.402
- Okuno Y, Hattori M, Kotera M, Igarashi Y, Goto S, Kanehisa M. “Vzyme: a template-based method to predict reactions between two chemical compounds” Genome Informatics. 2002;13:355-56. Available from: https://doi.org/10.11234/gi1990.13.355
- Kotera M, Okuno Y, Hattori M, Goto S, Kanehisa M. “Classification and analysis of KEGG/REACTION database” Genome Informatics. 2002;13:490-91. Available from: https://www.jsbi.org/pdfs/journal1/GIW02/GIW02P122.pdf
- Igarashi Y, Okuno Y, Goto S, Kanehisa M. “The construction and analysis of the multidrug resistance transporter knowledge-base” Genome Informatics. 2002;13:494-95. Available from: https://www.jstage.jst.go.jp/article/gi1990/13/0/13_0_494/_pdf
- Yamamoto R, Komeno T, Goto S, Okuno Y, Hattori M, Kanehisa M. “Improvement of the LIGAND chemical database” Genome Informatics. 2002;13:492-93. Available from: https://www.jstage.jst.go.jp/article/gi1990/13/0/13_0_492/_pdf
-
-
2000)
- Hori Y, Suzuki K, Okuno Y, Nagaoka M, Futaki S, Sugiura Y. “Artificial zinc finger peptide containing a novel His4 domain” J. Am. Chem. Soc. 2000;122:7648-53. Available from: https://doi.org/10.1021/ja994009g
- Okuno Y, Iwashita T, Sugiura Y. “Structural basis for reaction mechanism and drug delivery system of chromoprotein antitumor antibiotics C-1027” J. Am. Chem. Soc. 2000;122:6848-54. Available from: https://doi.org/10.1021/ja994323a
- Hori Y, Suzuki K, Okuno Y, Nagaoka M, Futaki S, Sugiura Y. “The engineering, structure, and DNA binding properties of a novel His4-type zinc finger peptide” Nucleic Acids Symp. Ser. 2000;44:295-96. Available from: https://doi.org/10.1093/nass/44.1.295
- Araki M, Okuno Y, Sugiura Y. “Expression mechanism of the allosteric interactions in a ribozyme catalysis” Nucleic Acids Symp. Ser. 2000;44:205-06. Available from: https://doi.org/10.1093/nass/44.1.205
-
1998)
- Araki M, Okuno Y, Hara Y, Sugiura Y. “Allosteric regulation of a ribozyme activity through ligand-induced conformational change” Nucleic Acids Res. 1998;26:3379-84. Available from: https://doi.org/10.1093/nar/26.14.3379
-
1997)
- Sugiura Y, Totsuka R, Araki M, Okuno Y. “Selective cleavages of tRNAphe with secondary and tertiary structures by enediyne antitumor antibiotics” Bioorg. Med. Chem. 1997;5:1229-34. Available from: https://doi.org/10.1016/s0968-0896(97)00052-7
-
1996)
- Okuno Y, Iwashita T, Otani T, Sugiura Y. “Interaction of C-1027 chromophore with d(GTATAC)2: A binding model based on NMR experiments” J. Am. Chem. Soc. 1996;118:4729-30. Available from: https://doi.org/10.1021/ja9602051
-
1995)
- Totsuka R, Aizawa Y, Uesugi M, Okuno Y, Matsumoto T, Sugiura Y. “RNA cleavage by C-1027 chromophore, an enediyne antitumor antibiotic: High selectivity to an anticodon arm” Biochem. Biophys. Res. Commun. 1995;208:168-73. Available from: https://doi.org/10.1006/bbrc.1995.1319
-
1994)
- Okuno Y, Otsuka M, Sugiura Y. “Computer modeling analysis for enediyne chromophore-apoprotein complex of macromolecular antitumor antibiotic C-1027” J. Med. Chem. 1994;37:2266-73. Available from: https://doi.org/10.1021/jm00041a004
-
1993)
- Matsumoto T, Okuno Y, Sugiura Y. “Specific interaction between a novel enediyne chromophore and apoprotein complex of macromolecular antitumor antibiotic C-1027” Biochem. Biophys. Res. Commun. 1993;195:659-66. Available from: https://doi.org/10.1006/bbrc.1993.2096