2026)
- Seungeon Lee, Takuto Koyama, Itsuki Maeda, Shigeyuki Matsumoto, Yasushi Okuno, HELM-BERT: Topology-Aware Representations for Chemically Modified Peptides, Journal of Chemical Information and Modeling, 2026/7/15, DOI:10.1021/acs.jcim.6c00451
- Kimihiro Yamazaki, Mutsuyo Wada, Yuichiro Wada, Atsushi Tokuhisa, Kento Ohga, Akira Nakagawa, Yoshinobu Akinaga, Yoko Sasakura, Takashi Katoh, Shigeyuki Matsumoto, Yasushi Okuno, Digital twin of biomacromolecular thermodynamics in cryo-EM data, Communications Chemistry. 2026/6/5, 49(3):852-862, doi: 10.1038/s42004-026-02077-5
- Chiba S, Ohta M, Yamane T, Okuno Y, Ikeguchi M, intDesc-AbMut: A Tool for Describing and Understanding How Antibody Mutations Impact Their Environmental Interactions, Comput Struct Biotech J, voi.35(1), 2026/4/27, doi:10.34133/csbj.0027
- Yoneda F, Nishiwaki S, Inoue T, Morinaga A, Tanaka M, Hata R, Kohjitani H, Shizuta S, Ono K, Impact of Expandable Cryoballoon on Pulmonary Vein Morphology and Treatment Selection in Atrial Fibrillation Ablation, Pacing Clin Electrophysiol, 2026/3/31, doi: 10.1111/pace.70227
- Toshiki Fujii, Mitsugu Araki, Shigeyuki Matsumoto, Biao Ma, Takao Otsuka, Gert-Jan Bekker, Narutoshi Kamiya, Hiroaki Ohno, Shinsuke Inuki, Yasushi Okuno, Elucidating Ligand Charge Effects in MR1 Cell-Surface Translocation Using Molecular Simulations, Journal of Chemical Information and Modeling, Vol.66(4), 2026/2/20, DOI : 10.1021/acs.jcim.5c02141
- Sakuragi M, Miyauchi M, Kubo M, Aso M, Ogura S, Sokai Y, Tsuji Y, Mori KP, Torikoshi K, Suzuki H, Komiya T, Muso E, Endo T, Matsubara T, Tsukamoto T, Plasma Exchange for Anti-GBM Disease With Dialysis Dependency: A Case Series on Clinical Outcomes and Safety, Ther Apher Dial., 2026/2/2, Vol.30(3) 353-362, doi:10.1002/1744-9987.70121
- Koyama T, Tsumura H, Okita R, Yamazaki K, Hasegawa A, Imamura K, Kato T, Iwata H, Kojima R, Inoue H, Matsumoto S, Okuno Y, Chemical genomics language model toward reliable and explainable compound-protein interaction exploration, J Cheminform, 2026/1/30, Vol.18, 29 (2026), doi:10.1186/s13321-026-01155-z
- Yuji Okamoto, Aya Nakamura , Ryosuke Kojima , Eiichiro Uchino, Yohei Mineharu, Yohei Harada, Mayumi Kamada, Minoru Sakuragi, Manabu Muto, Motoko Yanagita, Yasushi Okuno, A deep state-space analysis framework for cancer patient latent state estimation and classification from EHR time-series data, PLOS One , 2026/1/30, 2026;21(1):e0341003, doi:10.1371/journal.pone.0341003
- Koyama T, Iwata H, Kojima R, Otsuka T, Hasegawa A, Lee S, Ueda H, Morimoto T, Sasaki R, Torimoto N, Murakami S, Tojo M, Honma T, Matsumoto S, Okuno Y, Empowering federated learning for robust compound-protein interaction prediction across heterogeneous cross-pharma domains, J Cheminform, 18(1):16, 2026/1/10, doi:10.1186/s13321-025-01147-5
- Yuji Okamoto, Transformers for Time-Series Forecasting: A Comprehensive Survey through 2024, NOLTA, E17-N(1) 260-278, 2026/1/1, doi.org/10.1587/nolta.17.260
