論文

Yamazaki K, Wada Y, Tokuhisa A, Wada M, Katoh T, Umeda Y, Okuno Y, Nakagawa A, An Auto-Encoder to Reconstruct Structure with Cryo-EM Images via Theoretically Guaranteed Isometric Latent Space, and Its Application for Automatically Computing the Conformational Pathway., Lecture Notes in Computer Science(including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 14220 LNCS, 394-404, 2023/10/1, doi: 10.1007/978-3-031-43907-0_38

Echizen H, Hanaoka K, Shimamoto K, Hibi R, Toma-Fukai S, Ohno H, Sasaki E, Komatsu T, Ueno T, Tsuchiya Y, Watanabe Y, Otsuka T, Saito H, Nagatoishi S, Tsumoto K, Kojima H, Okabe T, Shimizu T, Urano Y,”Discovery of a cystathionine γ-lyase (CSE) selective inhibitor targeting active-site pyridoxal 5′-phosphate (PLP) via Schiff base formation”, Scientific Reports  ,1,316,456,2023/9/30,  https://doi.org/10.1038/s41598-023-43536-6

Hattori EY, Arakawa Y, Mineharu Y, Furukawa K, Terada Y, Yamao Y, Tanji M, Kikuchi T, Miyamoto S. , Seizure control by adding on other anti-seizure medication on seizure during levetiracetam administration in patients with glioma-related epilepsy.  , BMC Cancer  , 23, 849 , 2023/9/11 , doi.org/10.1186/s12885-023-11273-8

Nakamura K, Uchino E, Sato N, Araki A, Terayama K, Kojima R, Murashita K, Itoh K, Mikami T, Tamada Y, Okuno Y , Individual health-disease phase diagrams for disease prevention based on machine learning , Journal of Biomedical Informatics , 144,104448 , 2023/8/23 , doi.org/10.1016/j.jbi.2023.104448

Matsuoka T, Hattori A, Oishi S, Araki M, Biao Ma, Fujii T, Arichi N, Okuno Y, Kakeya H, Yamasaki S, Ohno H, Inuki S , Establishment of an MR1 Presentation Reporter Screening System and Identification of Phenylpropanoid Derivatives as MR1 Ligands. , Journal of medicinal chemistry , 66(17),12520–12535 , 2023/8/23 , doi.org/10.1021/acs.jmedchem.3c01122

Nojima S#*, Kadoi T, Suzuki A, Kato C, Ishida S, Kido K, Fujita K, Okuno Y, M. Hirokawa, K. Terayama*, Morii E, , Deep-learning-based differential diagnosis of follicular thyroid tumors using histopathological images , Modern Pathology ,100296,2023/7/31, DOI: 10.1016/j.modpat.2023.100296

Aya Nakamura, Ryosuke Kojima, Yuji Okamoto, Eiichiro Uchino, Yohei Mineharu, Yohei Harada, Mayumi Kamada, Manabu Muto, Motoko Yanagita, Yasushi Okuno , A New Deep State-Space Analysis Framework for Patient Latent State Estimation and Classification from EHR Time Series Data. , arXiv:2307.11487 , 2023/7/21 , https://doi.org/10.48550/arXiv.2307.11487

Koyama T, Matsumoto S, Iwata H, Kojima R, Okuno Y. , Improving Compound–Protein Interaction Prediction by Self-Training with Augmenting Negative Samples , Journal of Chemical Information and Modeling , , 63, 15 , 4552–4559 , 2023/7/17 , https://pubs.acs.org/doi/full/10.1021/acs.jcim.3c00269

Hatano N, Kamada M, Kojima R, Okuno Y , Network-based prediction approach for cancer-specific driver missense mutations using a graph neural network. , bioRxiv , 2023/7 , https://doi.org/10.1101/2023.07.05.547896

Shimizu S, Kondo J, Onuma K, Coppo R, Ota K, Kamada M, Harada H, Tanaka Y, Adachi Nakazawa M, Tamada Y, Okuno Y, Kawada K, Kazutaka Obama, Robert J. Coffey, Yoshiyuki Fujiwara, Masahiro Inoue , Inhibition of the bone morphogenetic protein pathway suppresses tumor growth through downregulation of epidermal growth factor receptor in MEK/ERK-dependent colorectal cancer , Cancer Science , 2023/6/25 , doi: 10.1111/cas.15882